Did someone say Nier? People complain about the gameplay and yeah it's not the best, but dem characters, dat plot. Yes. It's one of those games after you put your controller down in the end (after multiple endings) you are like, "damn."
I liked XIII, and XIII-2. XIII-2 is superior if you consider just the RPG elements, ie some amount of choice, non linearity, and exploration, but I liked XIII better because of the story (for those of us who could actually understand the story).
Ni No Kuni was a gem too. Getting my "gotta catch them all" stuff with a side of ghibli is always nice.
That's all I could remember. I've been realizing more and more that I just haven't been playing lots of JRPGs at all. I played Blue Dragon and Eternal Sonata, but not a lot of it, they just didn't hold my interest, although they might be more traditional JRPG in more ways than a lot of games.
As far as WRPGS, I can only think of Mass Effect and Dragon Age, both of which are a great series. I like their story centric-ness because other WRPGs, they tend to overwhelm me while not giving me the character/story focus that I tend to like more. Like Kingdoms of Amalur, although to be fair I game that game almost no time even though I meant too.